Molecular Mechanics
Ascalaph and Abalone - our molecular mechanic packages
MDynaMix general purpose molecular dynamics code for simulations of mixtures
Division of Physical Chemistry, Stockholm University
Amber - Assisted Model Building with Energy Refinement
GROMACS versatile package to perform molecular dynamics
CHARMM - Chemistry at HARvard Macromolecular Mechanics
Harvard University and
Accelrys, Inc.
BOSS & MCPRO - Biochemical and Organic Simulation System
Yale University, Department of Chemistry
GROMOS BIOMOS.
VMD & NAMD - Visual Molecular Dynamics
Theoretical and Computational Biophysics Group.
TINKER - Software Tools for Molecular Design
Chemistry Department, University of New Mexico.
PCMODEL Serena Software.
YASARA - Yet Another Scientific Artificial Application YASARA Biosciences.
Q Molecular dynamics program
Johan Åqvist Group at Uppsala University, Uppsala, Sweden.
MCCCS Towhee - Monte Carlo for Complex Chemical Systems
Sandia National Laboratories.
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
Sandia Corporation.
Moldy molecular dynamics of University of Oxford.
MMC Metropolis Monte Carlo program.
ECEPPAK molecular mechanics of Cornell University.
ICM molecular mechanics from Molsoft.
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